Environmental properties and microbial communities in coastal waters of Barrow, Alaska from 2007-07-11 to 2009-01-14 (NCEI Accession 0073540)
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title: Environmental properties and microbial communities in coastal waters of Barrow, Alaska from 2007-07-11 to 2009-01-14 (NCEI Accession 0073540)
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abstract: The data set consists of basic water column properties of the Beaufort Sea and the Chukchi Sea near Barrow, Alaska. The environmental properties include salinity, temperature, chlorophyll a, major plant nutrients, and ice and snow cover. The microbial data included the abundance of various microbial groups, leucine incorporation, and the abundance of genes for 16S rRNA and ammonia monooxygenase (amoA). The data were collected in summer 2007, winter and summer 2008, and winter 2009.
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supplementalInformation: National Science foundation; Arctic Sciences Division; Office of Polar Programs (OPP) PIs: David Kirchman and Matthew Cottrell Project Name and number: Chemolithoautotrophy in the Arctic Ocean- environmental genomics and functional analyses;OPP0632233 Publication resulting from this research: - Christman, G.D., M.T. Cottrell, B.N. Popp, E. Gier, and D.L. Kirchman (2011) Abundance, Diversity, and Activity of Ammonia-Oxidizing Prokaryotes in the Coastal Arctic Ocean in Summer and Winter. Appl. Environ. Microbiol. 77: 2026-2034. - Cottrell, M.T., and D.L. Kirchman (2009) Photoheterotrophic Microbes in the Arctic Ocean in Summer and Winter. Appl. Environ. Microbiol. 75: 4958-4966.
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linkage: https://www.ncei.noaa.gov/archive/accession/oas/73540
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/73540
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0034/0073540/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0073540 v1.1 was published.
dateTime:
DateTime: 2011-06-13T13:40:58Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0073540 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0073540/1.1
protocol: HTTPS
name: NCEI Accession 0073540 v1.1
description: published 2011-06-13T13:40:58Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) repository
levelDescription: (MD_ScopeDescription)
other: NOAA National Centers for Environmental Information
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NOAA created the National Centers for Environmental Information (NCEI) by merging NOAA's National Climatic Data Center (NCDC), National Geophysical Data Center (NGDC), and National Oceanographic Data Center (NODC), including the National Coastal Data Development Center (NCDDC), per the Consolidated and Further Continuing Appropriations Act, 2015, Public Law 113-235. NCEI launched publicly on April 22, 2015.
dateTime:
DateTime: 2015-04-22T00:00:00
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metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: Flow Cytometer
type: Flow Cytometer
description: A method to enumerate bacterial and phytoplankton cells in seawater and estimate their spherical diameter Flow cytometers are laboratory based instruments used to measure cells and particles from aqueous samples. The instrument was initially developed for analysis of Human blood cells for medical purposes, but this technology was adopted by the ocean science community by several investigators, principally Penny Chischolm out of the Massachusetts Institute of Technology, in late 20th century. Since then, the technique has been broadly applied, and it is a unique measurement of microbial populations in the ocean because it provides one at a time measures of cells, to extrapolate features such as fluorescence and cell size. Flow cytometers have been adapted for a number of oceanographic applications such as ship board measurement, and more precise measurement of planktonic fractions. Additionally, the flow cytometer has been adapted for in-situ deployment (see the corresponding nodc instrument code).
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: fluorescence microscope
type: fluorescence microscope
description: Light Stimulating Microscope An optical microscope used to study properties of substances using fluorescence. The specimen is illuminated with light of a specific wavelength (or wavelengths) which is absorbed, causing light of longer wavelengths to be emitted.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: fluorometer
type: fluorometer
description: fluorometer
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: laboratory analysis
type: laboratory analysis
description: use as an observation type
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: nutrient autoanalyzer
type: nutrient autoanalyzer
description: Laboratory Instrument Nutrient Autoanalyzer is a generic term describing an automated flow-thru system used to conduct analyses of several different nutrients (nitrate, ammonium, orthophosphate, and silicate) simultaneously from a seawater sample. For example: SEAL AutoAnalyzer 3 HR Continuous Segmented Flow Analyzer
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: PCR machine
type: PCR machine
description: thermal cycler, thermocycler, PCR machine, DNA amplifier The thermal cycler (also known as a thermocycler, PCR machine or DNA amplifier) is a laboratory apparatus most commonly used to amplify segments of DNA via the polymerase chain reaction (PCR). https://en.wikipedia.org/wiki/Thermal_cycler, 2017-05-02.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: pump sampler
type: pump sampler
description: generic name for instrument that pumps water from depth to be filtered through a sieve
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: refractometer
type: refractometer
description: refractometer
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: scintillation counter
type: scintillation counter
description: measures ionizing radiation A scintillation counter is an instrument for detecting and measuring ionizing radiation by using the excitation effect of incident radiation on a scintillating material, and detecting the resultant light pulses.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: spectrophotometer
type: spectrophotometer
description: spectrophotometer, optical spectrometer, spectrograph or spectroscope An optical spectrometer (spectrophotometer, spectrograph or spectroscope) is an instrument used to measure properties of light over a specific portion of the electromagnetic spectrum, typically used in spectroscopic analysis to identify materials. Butler, L. R. P.; Laqua, K. (1995). "Nomenclature, symbols, units and their usage in spectrochemical analysis-IX. Instrumentation for the spectral dispersion and isolation of optical radiation (IUPAC Recommendations 1995)". Pure Appl. Chem. IUPAC. 67 (10): 1725–1744. doi:10.1351/pac199567101725. A spectrometer is the general term for describing a combination of spectral apparatus with one or more detectors to measure the intensity of one or more spectral bands."
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: thermometer
type: thermometer
description: generic thermometer or reversing thermometer use thermometer when temperature is a data type, but the exact instrument used to measure temperature is unknown
