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title: The Coral Reef Temperature Anomaly Database (CoRTAD) Version 4 - Global, 4 km Sea Surface Temperature and Related Thermal Stress Metrics for 1981-10-31 to 2010-12-31 (NCEI Accession 0087989)
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abstract: The Coral Reef Temperature Anomaly Database (CoRTAD) is a collection of sea surface temperature (SST) and related thermal stress metrics, developed specifically for coral reef ecosystem applications but relevant to other ecosystems as well. The CoRTAD Version 4 contains global, approximately 4 km resolution SST data on a weekly time scale from 1981 through 2010. Version Changes: Version 4, 1981-10-31 - 2010-12-31, Global 4320x8640, Tile 540x540, NetCDF-4 Classic Version 3, 1982-01-01 - 2009-12-31, Global 4096x8192, Tile 512x512, HDF5 Version 2, 1982-01-01 - 2008-12-31, Global 4096x8192, Tile 512x512, HDF5 Version 1, 1985-01-01 - 2005-12-31, Global 4096x8192, Tile 512x512, HDF4 NODC Accession Numbers: v3 0068999; v2 0054501; v1 0044419 CoRTAD 4 is derived from Pathfinder 5.2 Sea Surface Temperature, while CoRTAD 3 utilized Pathfinder 5.1 and 5.0. CoRTAD 4 has 14 extra months of data, 11 percent more pixels and is produced in NetCDF-Classic format compared to CoRTAD 3. CoRTAD 4 has slightly improved harmonics and contains additional metadata. CoRTAD 4 is compliant with version 1.0 of NODC's NetCDF templates. In addition to SST, the CoRTAD contains SST anomaly (SSTA, weekly SST minus weekly climatological SST), thermal stress anomaly (TSA, weekly SST minus the maximum weekly climatological SST), SSTA Degree Heating Week (SSTA_DHW, sum of previous 12 weeks when SSTA >= 1 degree C), SSTA Frequency (number of times over the previous 52 weeks that SSTA >= 1 degree C), TSA DHW (TSA_DHW, also known as Degree Heating Week, sum of previous 12 weeks when TSA >= 1 degree C), and TSA Frequency (number of times over previous 52 weeks that TSA >=1 degree C). The CoRTAD was created at the NOAA National Oceanographic Data Center in partnership with the University of North Carolina - Chapel Hill, with support from the NOAA Coral Reef Conservation Program. The purpose of the CoRTAD is to provide sea surface temperature data and related thermal stress parameters with good temporal consistency, high accuracy, and fine spatial resolution. The CoRTAD is intended primarily for climate and ecosystem related applications and studies and was designed specifically to address questions concerning the relationship between coral disease and bleaching and temperature stress.
purpose: To provide sea surface temperature data and related thermal stress parameters with good temporal consistency, high accuracy, and fine spatial resolution. The CoRTAD is intended primarily for climate and ecosystem related applications and studies and was designed specifically to address questions concerning the relationship between coral disease and bleaching and temperature stress.
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supplementalInformation: [Text below adapted from: Selig, E.R., K.S. Casey, and J.F. Bruno (2010). New insights into global patterns of ocean temperature anomalies: implications for coral reef health and management, Global Ecology and Biogeography, https://doi.org/10.1111/j.1466-8238.2009.00522.x. Hereafter referred to as "SCB2010".] The CoRTAD was developed using data from the Pathfinder Version 5.2 collection produced by the National Oceanic and Atmospheric Administration's (NOAA) National Oceanographic Data Center (NODC) and the University of Miami's Rosenstiel School of Marine and Atmospheric Science. These sea surface temperature data are derived from the Advanced Very High Resolution Radiometer (AVHRR) sensor and are processed to a resolution of approximately 4.6 km at the equator. These data have the highest resolution covering the longest time period of any satellite-based ocean temperature dataset. Daytime and nighttime data were averaged weekly using data with a quality flag of 4 or better. This level is a commonly accepted cutoff for "good" data (Kilpatrick et al., 2001, Casey and Cornillon, 1999). Previous versions of CoRTAD also incorporated pixels up to 5 degrees warmer than a course resolution reference SST based on the Reynolds Optimum Interpolation Sea Surface Temperature (OISST version 2.0). Since Pathfinder Version 5.2 already uses a finer resolution reference field (25 km Daily OISST) this additional step was not incorporated. These processes resulted in a weekly SST dataset that is roughly 80% gap free. To create a gap-free dataset for analysis, 3 x 3 pixel median spatial fill was used. A temporal fill was performed using the Piecewise Cubic Hermite Interpolating Polynomial (PCHIP) function in Matlab (The Mathworks Inc.) to fill the remaining gaps. This conservative approach was chosen because it provided interpolated SSTs that are bounded by the nearest available values in time. It also used data from only a very limited spatial domain, which is an important consideration given the variability of coral reef environments. Using these gap-filled data, we then created site-specific climatologies for each reef grid cell to describe long-term temperature patterns over the 29-year dataset (Eqn. 1). The climatology was generated using a harmonic analysis procedure that fits annual and semi-annual signals to the time series of weekly SSTs at each grid cell: climSST(t) = A*cos(2pi*t + B) + C*cos(4pi*t + D) + E (1) where t is time, A and B are coefficients representing the annual phase and amplitude, C and D are the semi-annual phase and amplitude, and E is the long-term temperature mean. Similar approaches have been used for generating climatologies because they are more robust than simple averaging techniques, which can be more susceptible to data gaps from periods of cloudiness (Podesta et al., 1991, Mesias et al., 2007). Earlier CoRTAD versions were derived from Pathfinder 5.0/5.1 which attempted to represent the SST's at depths of about 1 meter, similar to the SST as measured by drifting buoys. Following the recommendations of the Group for High Resolution SST (GHRSST), Pathfinder 5.2 represents the "skin" SST that is actually measured by the AVHRR instruments. Thus, Pathfinder Version 5.2 SST's are on average 0.17K lower than those of earlier versions (Donlon et al., 2007). This difference is only in the temperature parameters of CoRTAD, since it is subtracted out in the calculations of the anomalies and all the derived thermal stress metrics. As of the release of CoRTAD version 4 a gap exists in the Pathfinder 5.2 dataset from 1994 day 275 to 1995 day 17 since Level 1B GAC data from NOAA-9 is not available from the NOAA archives. For these 3.5 months SST has been interpolated from Pathfinder 5.0 and 0.17K is subtracted to get the skin temperature. Temperature anomaly metrics: Several metrics could be used to link coral reef ecosystem health with temperature including trophic structure, diversity or percent coral cover (Newman et al., 2006, Roberts et al., 2002, Bruno and Selig, 2007). However, this analysis focused on coral bleaching and disease because they are key drivers of coral decline and their relationships with temperature patterns are better understood (Aronson and Precht, 2001, Bruno et al., 2007, Glynn, 1993). Analyses were performed on two metrics (see Table 1 of SCB2010): one that is commonly known to lead to bleaching (Liu et al., 2003, Strong et al., 2004, Glynn, 1993), and one that is correlated with increased disease severity (Selig et al., 2006, Bruno et al., 2007). Coral bleaching results when corals lose their symbiotic zooxanthellae (Glynn, 1993, Glynn, 1996). Bleaching is a natural stress response not only to warm temperatures, but also to cool temperatures (Hoegh-Guldberg and Fine, 2004) as well as light and salinity values different from the normal range (Glynn, 1993). Corals can recover from bleaching, but their ability to do so is dependent on the magnitude and duration of the anomaly event (Glynn, 1993). The temperature thresholds that result in coral bleaching vary by location and species (Berkelmans and Willis, 1999). Bleaching is often connected to Thermal Stress Anomalies (TSAs), which are defined as areas where temperatures exceed by 1 degree C or more the climatologically warmest week of the year (Table 2, Glynn, 1993). The temperature anomaly thresholds relevant to disease have been studied in only one pathogen-host system (Selig et al., 2006, Bruno et al., 2007). In that system, changes in disease cases were correlated with Weekly Sea Surface Temperature Anomalies (WSSTAs), temperatures that were 1 degree C greater than the weekly average for that location. The best metric for predicting bleaching or disease may vary according to location, species, and pathogen (Selig et al., 2006, Bruno et al., 2007, Berkelmans, 2002). For example, bleaching on the Great Barrier Reef was best predicted by the maximum anomaly over a 3 day period (Berkelmans et al., 2004), rather than an anomaly metric like the TSA. Although the 7-day averaging approach in the CoRTAD may be too temporally coarse to capture all bleaching events, it is necessary to maintain consistency and minimize gaps in the dataset across broad spatial scales. In addition, the data are less likely to yield false positives for TSAs and will likely capture most WSSTA events, which have a lower temperature threshold. References: (see SCB2010 for complete list) In this accession, NCEI has archived multiple versions of these data. The latest (and best) version of these data has the largest version number.
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distributorFormat: (MD_Format)
name: netCDF
version: netCDF-4 classic model
specification: NODC_NetCDF_Grid_Template_v0.9, CF-1.6, Unidata Dataset Discovery v1.0
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transferSize:
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onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/products/coral-reef-temperature-anomaly-database
protocol: HTTP
applicationProfile: Web browser
name: HTTP
description: Navigate directly to the URL for a descriptive web page.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: http://www.ncei.noaa.gov/data/oceans/cortad/Version4/
protocol: HTTP
applicationProfile: Web browser
name: HTTP
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/pub/data.nodc/cortad/Version4/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: http://www.ncei.noaa.gov/thredds-ocean/catalog/cortad/Version4/catalog.html
protocol: THREDDS
applicationProfile: Web browsers can browse THREDDS Data Servers and specialized THREDDS software can enable more sophisticated data access and visualizations.
name: THREDDS
description: These data are available through a variety of services via a THREDDS (Thematic Real-time Environmental Distributed Data Services) Data Server (TDS). Depending on the dataset, the TDS can provide WMS, WCS, DAP, HTTP, and other data access and metadata services as well. For more information on the TDS, see http://www.unidata.ucar.edu/software/thredds/current/tds/.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: https://doi.org/10.7289/v59g5jr3
protocol: HTTPS
applicationProfile: Web browser
name: NCEI Dataset Landing Page
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/87989
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/87989
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0052/0087989/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0087989 was revised and v2.2 was published.
rationale: Updates were received for this dataset. These updates were copied into the data/0-data/ directory of this accession. These updates may provide additional files or replace obsolete files. This version contains the most complete and up-to-date representation of this archival information package. All of the files received prior to this update are available in the preceding version of this accession.
dateTime:
DateTime: 2012-04-10T16:16:08Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0087989 v2.2
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0087989/2.2
protocol: HTTPS
name: NCEI Accession 0087989 v2.2
description: published 2012-04-10T16:16:08Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
processStep: (LE_ProcessStep)
description: NCEI Accession 0087989 v1.1 was published.
dateTime:
DateTime: 2021-10-15T13:20:36Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0087989 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
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individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0087989/1.1
protocol: HTTPS
name: NCEI Accession 0087989 v1.1
description: published 2021-10-15T13:20:36Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) repository
levelDescription: (MD_ScopeDescription)
other: NOAA National Centers for Environmental Information
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NOAA created the National Centers for Environmental Information (NCEI) by merging NOAA's National Climatic Data Center (NCDC), National Geophysical Data Center (NGDC), and National Oceanographic Data Center (NODC), including the National Coastal Data Development Center (NCDDC), per the Consolidated and Further Continuing Appropriations Act, 2015, Public Law 113-235. NCEI launched publicly on April 22, 2015.
dateTime:
DateTime: 2015-04-22T00:00:00
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metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
maintenanceNote: NCEI Accession 0087989 was revised and a new version of the archival package was published. Updates to existing archival packages may provide additional files or replace obsolete files. The latest version contains the most complete and up-to-date representation of this archival information package. All of the files received prior to this update are available in the preceding version of this accession. Please see journal.txt in the /about directory for additional details on changes made.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: AVHRR-2
type: AVHRR-2
description: Advanced Very High Resolution Radiometer-2 The AVHRR-2 is a multi purpose imaging instrument used for global measurement of cloud cover, sea surface temperature, ice, snow and vegetation cover and characteristics. This instrument was initially carried on NOAA-7 (launched June 1981) and was last flown on NOAA-14 which was decommissioned in 2005. This 5-channel radiometer covering 2 visible and 3 thermal infrared between 0.63 and 12.0 micrometers, has an instantaneous footprint of 1.1 km at the sub satellite point. Additional Information: https://nwpsaf.eu/deliverables/aapp/avhrr_2.html
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: AVHRR-3
type: AVHRR-3
description: Advanced Very High Resolution Radiometer-3 The AVHRR-3 is a six channel scanning radiometer providing 3 solar channels in the visible-near infrared region and 3 thermal infrared channels. The AVHRR-3 has two one-micrometer wide channels between 10.3 and 12.5 micrometers. This latest version of AVHRR was first carried on NOAA-15 launched in May 1998 and subsequently in all current NOAA and MetOp platforms. Measuring the same view, this array of diverse wavelengths, after processing, permits multi spectral analysis for more precisely defining hydrologic, oceanographic, and meteorological parameters. Comparison of data from two channels is often used to observe features or measure various environmental parameters. The three channels operating entirely within the infrared band are used to detect the heat radiation from and hence, the temperature of land, water, sea surfaces, and the clouds above them. Additional Information: http://www.ncdc.noaa.gov/oa/pod-guide/ncdc/docs/klm/html/c3/sec3-1.htm
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-11
description: https://www.wmo-sat.info/oscar/satellites/view/333 Instruments: AVHRR/2 et al
instrument: #inst_be0e
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-14
description: https://www.wmo-sat.info/oscar/satellites/view/336 Instruments: AVHRR/2 et al
instrument: #inst_be0e
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-16
description: Updated information from ICES for the platform NOAA-16 from United States. Name NOAA-16 Country(s) US: UNITED STATES Platform Class 65: Orbiting satellite Native Name Synonyms Call Sign MMSI IMO Pennant Title Commissioned Date 2000 Decommissioned Date 2014 Notes Polar-orbiting environmental satellite launched September 2000. The NODC has archived AVHRR SST data collected from this platform as part of the Pathfinder project. Instruments: AVHRR/3 et al Information Source (URL) https://www.wmo-sat.info/oscar/satellites/view/338 Confirmed by NOAA on 2018-07-17.
instrument: #inst_be0f
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-17
description: Updated information from ICES for the platform NOAA-17 from United States. Name NOAA-17 Country(s) US: UNITED STATES Platform Class 65: Orbiting satellite Native Name Synonyms Call Sign MMSI IMO Pennant Title Commissioned Date 2002 Decommissioned Date 2013 Notes Polar-orbiting environmental satellite launched June 2002. The NODC has archived AVHRR SST data collected from this platform as part of the Pathfinder project. Instruments: AVHRR/3 et al Information source (URL) https://www.wmo-sat.info/oscar/satellites/view/339 Confirmed by NOAA on 2018-07-17.
instrument: #inst_be0f
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-18
description: Updated information from ICES for the platform NOAA-18 from United States. Name NOAA-18 Country(s) US: UNITED STATES Platform Class 65: Orbiting satellite Native Name Synonyms Call Sign MMSI IMO Pennant Title Commissioned Date 2005 Decommissioned Date 2016 Notes Polar-orbiting environmental satellite launched May 2005 as NOAA-N. The NODC has archived AVHRR SST data collected from this platform as part of the Pathfinder project. Instruments: AVHRR/3 et al Information source (URL) https://www.wmo-sat.info/oscar/satellites/view/340 Confirmed by NOAA on 2018-07-17.
instrument: #inst_be0f
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-7
description: Updated information from ICES for the platform NOAA-7 from UNITED STATES. Name NOAA-7 Country(s) US: UNITED STATES Platform Class 65: Orbiting satellite Commissioned Date 1981-06-23 Decommissioned Date 1986-06-07 Notes Selected global data available from NOAA. Significant contribution to Space weather and operational meteorology. Information source (URL) https://www.wmo-sat.info/oscar/satellites/view/329 All known Instruments flying on NOAA-7 Acronym - Full name Argos - Argos Data Collection System AVHRR/2 - Advanced Very High Resolution Radiometer / 2 HIRS/2 - High-resolution Infra Red Sounder / 2 MSU - Microwave Sounding Unit SSU - Stratospheric Sounding Unit SEM/MEPED - SEM / Medium energy proton detector SEM/TED - SEM / Total Energy Detector Submitted to ICES on 2018-07-17. Confirmed by NOAA on 2018-08-08.
instrument: #inst_be0e
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA-9
description: Updated information from ICES for the platform NOAA-9 from UNITED STATES. Name NOAA-9 Country(s) US: UNITED STATES Platform Class 65: Orbiting satellite Confirmed by NOAA on 2018-08-08. Commissioned Date 1984-12-12 Decommissioned Date 1998-02-13 Notes Selected global operational meteorology data available from NOAA. Significant contribution to Atmospheric chemistry and Space weather. All known Instruments flying on NOAA-9 Acronym - Full name Argos - Argos Data Collection System AVHRR/2 - Advanced Very High Resolution Radiometer / 2 ERBE - Earth Radiation Budget Experiment HIRS/2 - High-resolution Infra Red Sounder / 2 MSU - Microwave Sounding Unit S&RSAT - Search & Rescue Satellite-Aided Tracking System SBUV/2 - Solar Backscatter Ultraviolet / 2 SSU - Stratospheric Sounding Unit SEM/MEPED - SEM / Medium energy proton detector SEM/TED - SEM / Total Energy Detector Information source (URL) https://www.wmo-sat.info/oscar/satellites/view/331 Submitted to ICES on 2018-07-17. Confirmed by NOAA on 2018-08-08.
instrument: #inst_be0e
