Processing Steps |
- Parameter or Variable: Response metric; Abbreviation: ResponseMetric; Observation type: meta-analysis; Detailed sampling and analyzing information: Response metric is a measure of the species performance under treatment (e.g., survival, metabolic rate, proteomic expression); Method reference: Busch, DS and McElhany, 2016 Estimates of the direct effect of seawater pH on the survival rate of species groups in the California Current Ecosystem. PLoS ONE 11(8): e0160669. https://doi.org/10.1371/journal.pone.0160669; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "study environment"; Abbreviation: R1; Observation type: meta-analysis; Detailed sampling and analyzing information: If study took place at a natural CO2 vent site or takes advantage of a natural gradient in CO2 conditions: 1; if study took place in a laboratory on multiple species living in the same experimental chamber: 0.75; All else: 0.5.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Ability to measure population persistence"; Abbreviation: R2; Observation type: meta-analysis; Detailed sampling and analyzing information: If the response has a known relationship to population persistence: 1.0; All else: 0.5; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Control pH treatment"; Abbreviation: R3; Observation type: meta-analysis; Detailed sampling and analyzing information: If pH treatment greater than or equal to 8.1: 0.5; if pH treatment greater than or equal to 7.8 and less than 8.1: 1.0; if pH is less than 7.8: 0.1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Minimum experimental pH treatment"; Abbreviation: R4; Observation type: meta-analysis; Detailed sampling and analyzing information: If pH treatment greater than 7.8: 0.5; if pH treatment less than or equal to 7.8: 1.0; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Relatedness to species in Puget Sound"; Abbreviation: R5; Observation type: meta-analysis; Detailed sampling and analyzing information: If species lives in Puget Sound: 1.0; If the genus but not species lives in Puget Sound: 0.75; If the family but not genus lives in Puget Sound: 0.5; If the order but not family lives in Puget Sound: 0.25; All else 0.1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Distribution in the Puget Sound"; Abbreviation: R6; Observation type: meta-analysis; Detailed sampling and analyzing information: If the species occurs in Puget Sound: 1.0; If the species occurs in the California Current: 0.75 If the species does not occur in the California Current: 0.25.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Collection location"; Abbreviation: R7; Observation type: meta-analysis; Detailed sampling and analyzing information: If study subjects were collected in the California Current: 1.0; If study subjects were collected close to the California Current: 0.75; If study subjects were not collected in the California Current or if collection location is unspecified: 0.25.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Response type"; Abbreviation: R8; Observation type: meta-analysis; Detailed sampling and analyzing information: If study evaluates decomposition, genomic response, harmful algal bloom variables, nitrogen fixation, proteomic response, viral shedding: 0.1; If study evaluates behavior, body composition, immune function, morphology: 0.2; If study evaluates acid-base balance, metabolism: 0.5; If study evaluates calcification: 0.8; If study evaluates development, growth, photosynthesis, reproductive rate, survival: 1.0.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Score from rule type on "Exposure duration"; Abbreviation: R9; Observation type: meta-analysis; Detailed sampling and analyzing information: If gamete, fertilized egg, spore: 1.0. If larvae/early life stage of phytoplankton, greater than or equal to 6 hours: 1.0, less than 6 hours: 0.5. If larvae/early life stage of macroalgae, seagrass, longer than or equal to 5 days: 1.0, less than 5 days: 0.5. If larvae/early life stage of abalone, krill, copepod, polychaete, longer than or equal to 6 days: 1.0, less than 6 days: 0.5. If larvae/early life stage of crab, longer than or equal to 30 days: 1.0, less than 30 days: 0.5. If larvae/early life stage of other invertebrates or vertebrates, longer than or equal to 14 days: 1.0, less than 14 days and longer than 7 days: 0.66, less than 7 days: 0.33. If juvenile stage of macroalgae or seagrass, longer than or equal to 30 days: 1.0, less than 30 days and longer than or equal to 7 days: 0.66, less than 7 days: 0.33. If juvenile stage of invertebrate, longer than or equal to 30 days: 1.0, less than 30 days and longer than or equal to 7 days: 0.66, less than 7 days: 0.33. If juvenile stage of vertebrate, longer than or equal to 90 days: 1.0, less than 90 days: 0.5. If adult stage of phytoplankton, bacteria, copepod, longer than or equal to 5 days: 1.0, less than 5 days: 0.5. If adult stage of macroalgae, seagrass, invertebrate, longer than or equal to 50 days: 1.0, less than 50 days and longer than or equal to 10 days: 0.66, less than 10 days: 0.33. If adult stage of vertebrate, longer than or equal to 100 days: 1.0, less than 100 days: 0.5. If duration undefined: 0.33.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s3; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Direction of species response to treatments; Abbreviation: ResponseToCO2; Observation type: meta-analysis; Detailed sampling and analyzing information: Direction of species response to treatments in papers included in the species response database.; Method reference: Busch, DS and McElhany, P 2016 Estimates of the direct effect of seawater pH on the survival rate of species groups in the California Current Ecosystem. PLoS ONE 11(8): e0160669. https://doi.org/10.1371/journal.pone.0160669; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Relative survival scalar calculated at the class level; Abbreviation: classScalar; Observation type: meta-analysis; Detailed sampling and analyzing information: A relative survival scalar describes the direction and degree to which survival of the class is affected by increased CO2 relative to other classes.; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Relative survival scalar calculated at the order level; Abbreviation: orderScalar; Observation type: Results from meta-analysis; Detailed sampling and analyzing information: A relative survival scalar describes the direction and degree to which survival of the order is affected by increased CO2 relative to other orders.; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Relative survival scalar calculated at the family level; Abbreviation: familyScalar; Observation type: Results from meta-analysis; Detailed sampling and analyzing information: A relative survival scalar describes the direction and degree to which survival of the family is affected by increased CO2 relative to other families.; Biological subject: Puget Sound species; Researcher name: Shallin Busch; Researcher institution: NOAA Ocean Acidification Program and Northwest Fisheries Science Center.
- Parameter or Variable: Whether or not a species in non-indigenous to Puget Sound; Abbreviation: Nonindigenous.
- Parameter or Variable: Reference indicating species presence in Puget Sound.; Abbreviation: SpeciesReference; Detailed sampling and analyzing information: Full reference given in Busch and McElhany References S1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s2.
- Parameter or Variable: Reference for species' mineralogy in the larval or juvenile stage.; Abbreviation: LarJuvMineralReference; Detailed sampling and analyzing information: Full reference given in Busch and McElhany References S1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s2.
- Parameter or Variable: Reference for species' mineralogy in the adult stage.; Abbreviation: AdultMineralReference; Detailed sampling and analyzing information: Full reference given in Busch and McElhany References S1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s2.
- Parameter or Variable: Reference for species' taxonomy.; Abbreviation: SpeciesTaxonomyReference; Detailed sampling and analyzing information: Full reference given in Busch and McElhany References S1.; Method reference: Busch, DS and McElhany, P 2017 Using mineralogy and higher-level taxonomy as indicators of species sensitivity to pH: A case-study of Puget Sound. Elem Sci Anth, 5: 53. Table S1: Scoring system used to define relevance of response to decreased ocean pH. https://doi.org/10.1525/elementa.245.s2.
- Parameter or Variable: Reference to manuscript included in species response database.; Abbreviation: Paper; Detailed sampling and analyzing information: Full reference given in Busch, DS and McElhany, 2016; Method reference: Busch, DS and McElhany, 2016 Estimates of the direct effect of seawater pH on the survival rate of species groups in the California Current Ecosystem. PLoS ONE 11(8): e0160669. https://doi.org/10.1371/journal.pone.0160669 .
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