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Longline trap data collected during R/V Apalachee cruise AP-1415 in the DeSoto Canyon from 2014-10-02 to 2014-10-10 (NCEI Accession 0172589)


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      DateTime:  2023-08-07T17:36:51Z
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            title:  Longline trap data collected during R/V Apalachee cruise AP-1415 in the DeSoto Canyon from 2014-10-02 to 2014-10-10 (NCEI Accession 0172589)
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                date:  2018-05-04
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                  Anchor:  NCEI Accession ID 0172589
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/4846 Bipana Sigdel
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/2186 Harte Research Institute for Gulf of Mexico Studies (HRI)
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1803 Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC)
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                individualName:  Dean Grubbs
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/719 Florida State University (FSU)
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                individualName:  Grubbs, R. Dean
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                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/719 Florida State University / Coastal and Marine Laboratory
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        abstract:  This dataset reports species caught using longline and trap sets during the R/V Apalachee cruise AP-1415 from October 02 to October 10, 2014. The objectives of this project were 1) to use large chevron traps and demersal longlines to describe and examine differences in the species assemblages and relative abundances of demersal fishes associated with the eastern and western walls of DeSoto Canyon and the adjacent continental slope (75-2000 m deep), 2) to collect liver and bile samples from dominant species to examine spatial and depth-mediated differences in exposure to polycyclic aromatic hydrocarbons (PAHs), 3) to collect muscle tissue from all species for stable isotope analyses including using radiocarbon ratios to examine attenuation of long-term exposure to hydrocarbons, and 4) to collect specimens and samples (including curation of new species) to aid in resolving phylogenetic uncertainties and understanding life history traits in collected taxa. This dataset contains the metadata and sample data associated with these objectives.
        purpose:  The purpose of this cruise was to assess the influence of oil and gas on water column and sediment biogeochemical processes and the distribution of substances that affect biological productivity.
        credit:  Related Funding Agency: Gulf of Mexico Research Initiative (GoMRI)
        credit:  Related Funding Agency: Gulf of Mexico Research Initiative Information & Data Cooperative
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            keyword:  DeSoto Canyon
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            otherConstraints:  Cite as: Grubbs, R. Dean; Florida State University / Coastal and Marine Laboratory (2018). Longline trap data collected during R/V Apalachee cruise AP-1415 in the DeSoto Canyon from 2014-10-02 to 2014-10-10 (NCEI Accession 0172589). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0172589. Accessed [date].
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            useLimitation:  Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
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                title:  Longline trap data collected during R/V Apalachee cruise AP-1415 in the DeSoto Canyon from 2014-10-02 to 2014-10-10.
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                    date:  2015-01-04
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                            linkage: https://doi.org/10.7266/N7CF9N3X
                            protocol:  HTTPS
                            name: https://doi.org/10.7266/N7CF9N3X
                            description:  GRIIDC Data Webpage
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                    role: (unknown)
                citedResponsibleParty:  (CI_ResponsibleParty)
                    individualName:  Grubbs, Dean R.
                    organisationName:  Florida State University / Coastal and Marine Laboratory
                    positionName:  Associate Director of Research
                    contactInfo:  (CI_Contact)
                        address:  (CI_Address)
                            electronicMailAddress:  dgrubbs@bio.fsu.edu
                    role:  (CI_RoleCode) pointOfContact
                citedResponsibleParty:  (CI_ResponsibleParty)
                    organisationName:
                      Anchor:  https://data.gulfresearchinitiative.org Gulf of Mexico Research Initivative and Data Cooperative (GRIIDC)
                    positionName:  distributor
                    contactInfo:  (CI_Contact)
                        address:  (CI_Address)
                            electronicMailAddress:  griidc@gomri.org
                        onlineResource:  (CI_OnlineResource)
                            linkage: https://data.gulfresearchinitiative.org
                            protocol:  HTTPS
                            name:  website
                            description:  Institution web page
                            function:  (CI_OnLineFunctionCode) information
                    role:  (CI_RoleCode) publisher
                presentationForm:  (CI_PresentationFormCode) tableDigital
            associationType:  (DS_AssociationTypeCode) crossReference
            initiativeType:  (DS_InitiativeTypeCode) collection
        language:
          LanguageCode:  eng; USA
        characterSet:  (MD_CharacterSetCode) utf8
        topicCategory:  (MD_TopicCategoryCode) environment
        topicCategory:  (MD_TopicCategoryCode) oceans
        topicCategory:  (MD_TopicCategoryCode) climatologyMeteorologyAtmosphere
        topicCategory:  (MD_TopicCategoryCode) biota
        extent:  (EX_Extent)
            geographicElement:  (EX_GeographicBoundingBox)
                westBoundLongitude:  -88.96823
                eastBoundLongitude:  -85.95779
                southBoundLatitude:  28.64462
                northBoundLatitude:  29.99998
            temporalElement:  (EX_TemporalExtent)
                extent:
                  TimePeriod:
                    beginPosition:  2014-10-02
                    endPosition:  2014-10-10
        supplementalInformation:  Submission Package ID: A5TWX8 Data Parameters and Units: AP-1415_MetadataQuery.csv file contains - Vessel = R/V Apalachee, Event ID = AP-1415, Event Date = DD-Month-YY, Set = DC-YY-SetNumber, Deep-C Station = Deep-C Station Code, Latitude_start (decimal degrees), Longitude_start (decimal degrees), Latitude_finish (decimal degrees), Longitude_finish (decimal degrees), TDR = Serial number for Lotek temperature/depth recorder deployed on line, DO (Dissolved Oxygen) meter was deployed = False/True, DO (Dissolved Oxygen) Concentration Value (ug/l), DO (Dissolved Oxygen Concentration Value (%), Temperature (degrees Celsius), Depth_min (meters), Time_in (mmss), Time_set (mmss), Time_ haul (mmss), Time_out (mmss), Longline/Trap/Both/Random = gear type used, Gear_Effort (longline) = hook sizes and count, Gear_Effort (trap) = number/size and types of trap used per set, Bait = bait type used, SeaState (feet), Wind speed (knots), Sediment sample = TRUE or FALSE, Set Comments = additional notes/measurements pertaining to each set; AP-1415_SampleData.csv file contains - event_id = AP-1415, Event_Date (MM/DD/YYYY), Set (Project-Year-Set Number) [e.g., DC-14-#### is the #### set on the Deep-C project for 2014], Deep-C Station (Name), ID_sample (number), ID_Data_sheet (number), ID_Data_sample (Project-Year-Sample Number) [e.g., DC-14-#### is the #### sample on the Deep-C project for 2014], ID_Species = scientific name, Sex = male/female, BW Weight (kg), Liver Weight (g), Core Temperature (degrees Celsius), SL = Standard Length for teleosts and pre-caudal length for sharks (cm), DW = Disk Width for batoid (cm), CW = Carapace Width for crustaceans (cm), CL = Carapace Length for crustaceans (cm), FL = Fork Length for telosts/sharks and disk length for batoid (cm), TL = Total Length for teleosts/batoids/crustaceans and stretched total length for sharks (cm), Mature = Yes, No, Maturity State = Mature, Juvenile, Neoteny, Pup, YOY (Young of Year), Tag number = dart or satellite tag number if released, Hook/Trap Size = hook size, Condition of swimming behavior if released = E (excellent), G (good), F (fair), P (poor), DOA (dead), SI = Biopsy for stable isotope analyses (# of samples), GN = Genetics samples (# of samples), RP = Reproductive tract (Y if collected), WM = White muscle for purposes other than stable isotopes – e.g. mercury analyses (# of samples), BD = Blood (# of vials), BI = Bile (Y if collected), ST = Stomach (Y if collected), AG = Aging structure = S (spines), R (rays), O (otoliths), V (vertebrae), Other 1, Other 2 = Any additional tissues collected (FSU liver, UNF liver, jaw, parasites), SP = Whole Specimen retained (Yes/No), VOU = Voucher Sample for museum curation (Yes if collected); Cruise ID: AP-1415
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    distributionInfo:  (MD_Distribution)
        distributor:  (MD_Distributor)
            distributorContact:  (CI_ResponsibleParty)
                organisationName:
                  Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
                contactInfo:  (CI_Contact)
                    phone:  (CI_Telephone)
                        voice:  +1-301-713-3277
                    address:  (CI_Address)
                        electronicMailAddress:  NCEI.Info@noaa.gov
                role:  (CI_RoleCode) pointOfContact
            distributionOrderProcess:  (MD_StandardOrderProcess)
                fees:  In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
                orderingInstructions:  Contact NCEI for other distribution options and instructions.
            distributorFormat:  (MD_Format)
                name:  Originator data format
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                transferSize:
                  Real:  0.62
                onLine:  (CI_OnlineResource)
                    linkage: https://www.ncei.noaa.gov/archive/accession/0172589
                    protocol:  HTTPS
                    applicationProfile:  Web browser
                    name:  NCEI Dataset Landing Page
                    description:  Navigate directly to the URL for a descriptive web page with download links.
                    function:  (CI_OnLineFunctionCode) information
                onLine:  (CI_OnlineResource)
                    linkage: https://www.ncei.noaa.gov/archive/accession/oas/172589
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                    applicationProfile:  Web browser
                    name:  Descriptive Information
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                    function:  (CI_OnLineFunctionCode) information
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                    linkage: https://www.ncei.noaa.gov/archive/accession/download/172589
                    protocol:  HTTPS
                    applicationProfile:  Web browser
                    name:  HTTPS
                    description:  Navigate directly to the URL for data access and direct download.
                    function:  (CI_OnLineFunctionCode) download
                onLine:  (CI_OnlineResource)
                    linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0119/0172589/
                    protocol:  FTP
                    applicationProfile:  Any FTP client
                    name:  FTP
                    description:  These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
                    function:  (CI_OnLineFunctionCode) download
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    dataQualityInfo:  (DQ_DataQuality)
        scope:  (DQ_Scope)
            level:  (MD_ScopeCode) dataset
        lineage:  (LI_Lineage)
            processStep:  (LE_ProcessStep)
                description:  NCEI Accession 0172589 v1.1 was published.
                dateTime:
                  DateTime:  2018-05-04T18:33:06Z
                output:  (LE_Source)
                    sourceCitation:  (CI_Citation)
                        title:  NCEI Accession 0172589 v1.1
                        date:  (CI_Date)
                            date: (inapplicable)
                            dateType:  (CI_DateTypeCode) publication
                        citedResponsibleParty:  (CI_ResponsibleParty)
                            individualName: (inapplicable)
                            contactInfo:  (CI_Contact)
                                onlineResource:  (CI_OnlineResource)
                                    linkage: https://www.ncei.noaa.gov/archive/accession/0172589/1.1
                                    protocol:  HTTPS
                                    name:  NCEI Accession 0172589 v1.1
                                    description:  published 2018-05-04T18:33:06Z
                                    function:  (CI_OnLineFunctionCode) download
                            role: (inapplicable)
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    dataQualityInfo:  (DQ_DataQuality)
        scope:  (DQ_Scope)
            level:  (MD_ScopeCode) dataset
        lineage:  (LI_Lineage)
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > FISH (measured); Units: N/A; Observation Category: biological; Sampling Instrument: In Situ/Laboratory Instruments > Samplers > Grabbers/Traps/Collectors > TRAPS.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > ATMOSPHERE > ATMOSPHERIC WINDS > SURFACE WINDS > WIND SPEED (measured); Units: knots; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > OCEANS > OCEAN TEMPERATURE > WATER TEMPERATURE (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: Temperature Depth Recorder.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > OCEANS > BATHYMETRY/SEAFLOOR TOPOGRAPHY > WATER DEPTH (measured); Units: meter; Observation Category: in situ; Sampling Instrument: Temperature Depth Recorder.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > OCEANS > OCEAN WAVES > SEA STATE (measured); Units: feet; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: EARTH SCIENCE > OCEANS > OCEAN WAVES > WAVE HEIGHT (measured); Units: feet; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: TEMPERATURE - WATER [WATER TEMPERATURE] (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: Temperature Depth Recorder.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: DEPTH - SENSOR (measured); Units: meter; Observation Category: in situ; Sampling Instrument: Temperature Depth Recorder.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: DISSOLVED OXYGEN (measured); Units: percent; Observation Category: in situ; Sampling Instrument: Dissolved Oxygen Meter.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: WIND SPEED (measured); Units: knot; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: SEA STATE (measured); Units: feet; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: WAVE HEIGHT (measured); Units: feet; Observation Category: in situ; Sampling Instrument: N/A; Sampling and Analyzing Method: estimated.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: FISH SPECIES (measured); Units: N/A; Observation Category: biological; Sampling Instrument: Longline Trap.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: FISHERY SURVEY (measured); Units: N/A; Observation Category: biological; Sampling Instrument: trap.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: FISHERY SURVEY - CATCH MEASUREMENTS - DETAILS (measured); Units: N/A; Observation Category: biological; Sampling Instrument: Longline Trap.
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    metadataMaintenance:  (MD_MaintenanceInformation)
        maintenanceAndUpdateFrequency:  (MD_MaintenanceFrequencyCode) asNeeded
        maintenanceNote:  Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
        contact:  (CI_ResponsibleParty)
            organisationName:  NOAA National Centers for Environmental Information
            role:  (CI_RoleCode) custodian
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    acquisitionInformation:  (MI_AcquisitionInformation)
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  trap
            type:  trap
            description:  generic type of instrument used to capture sediment, animals, etc.